Package index • BGSmartR

Matching functions

match_authors(): Find best author matches

match_collection_to_enrich_database(): Match collection to an enrichment database via taxonomic names

match_collection_to_iucnRedlist(): Match collection to IUCN Red List of Threatened Species via taxonomic name

match_original_to_BGCI(): match_original_to_BGCI()

match_single() match_multiple() match_all_issue() match_typos() no_match_cultivar_indet() get_match_from_multiple() check_taxon_typo() shorten_message() try_rm_autonym() try_fix_infraspecific_level() try_fix_hybrid(): Matching functions

no_additional_matching() additional_wcvp_matching(): Matching criterions

author_words(): Extract words from author

author_check(): Compare two authors

author_from_taxon_name_full(): Separate author from combined taxonomic name and author

sanitise_name() sanitise_authors() sanitise_names_authors() sanitise_names_authors_report(): Sanitising functions

taxon_type() add_taxon_type(): Extract the taxon type (biological/horticultural characteristics)

WCVP/POWO specific functions

convert_to_accepted_name(): Convert to accepted plant name for World Checklist of Vascular Plants

no_additional_matching() additional_wcvp_matching(): Matching criterions

enrich_collection_from_enrich_database(): Enrich a collection using enrichment database

match_collection_to_wcvp(): Match collection to World Checklist of Vascular Plants via taxonomic name

add_wcvp_distributions(): Add wcvp_distributions information to wcvp_names

import_wcvp_names(): Information from wcvp_names

generate_labels(): generate_labels()

get_accepted_plant(): Get accepted plant details from POWO online

Enriching functions

add_status_year(): Add status year column to collection

enrich_collection(): Enrich a collection's database

enrich_collection_from_enrich_database(): Enrich a collection using enrichment database

Create enrichment databases

prepare_enrich_database(): Prepare enrichment database for matching

Modules

create_data_health_report(): Create data health module

create_duplication_report(): Create rarity and duplication module

create_native_report() create_endemic_report() create_threatened_report() create_trees_report(): Create key collections module

create_overview_report(): Create overview module

create_sustainability_report(): Create collection longevity module

create_taxonomic_diversity_report() create_geography_report(): Create diversity module

create_trends_report() create_turnover_report(): Create collection dynamics module

Simplified datasets

typo_list: Taxon name typos

wgsrpd3_level1_simp: wgsrpd3_level1_simp

wgsrpd3_level2_simp: wgsrpd3_level2_simp

wgsrpd3_level3_simp: wgsrpd3_level3_simp

tribe_genus_simp: Tribe information

subtribe_genus_simp: Sub-tribe information

subfamily_genus_simp: Sub-family information

Diversity_classification: Diversity_classification

collection_example: Example collection data

enriched_collection_example: Example enriched collection data

Misc

value_of_items(): Create value of items in a collection

is_autonym() add_is_autonym(): Find if a taxonomic name is an autonym

exist_at_date(): Generate data frame of records that exist each year

extract_year(): Extract the year from different date formats

add_alpha(): Add transparency to colours